Not asking anything, just sharing some info in case anyone else would stumble upon this issues.
Tried both SAMD20 and SAMD21 Xplained boards on three different computers (WIN7, WIN8/64 and XP/32), always same error - Flash Init Failed.
Then found SAM-BA 2.14 distributive, installed and it works.
So apparently Atmel somehow broke applets for 20/21 in version 2.15 of SAM-BA.
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